Index

A

apply_adaptive_filtering_to_epochs() (gaitmod.DataProcessor static method)

B

BaseModel (class in gaitmod) BaseModel.MyMeanAbsoluteError (class in gaitmod) BaseModel.MyMeanSquaredError (class in gaitmod)

BaseModel.R2Score (class in gaitmod) build_model() (gaitmod.ClassificationLSTMModel method) (gaitmod.LSTMClassifier method) (gaitmod.RegressionLSTMModel method)

C

calculate_class_weights() (gaitmod.LSTMClassifier method) check_and_fix_lfp_chs_name() (gaitmod.DataProcessor static method) check_event_order() (gaitmod.DataProcessor static method) ClassificationLSTMModel (class in gaitmod) ClassificationModels (class in gaitmod) clean_data() (gaitmod.DataProcessor static method)

convert_lfp_label() (gaitmod.DataProcessor static method) create_epochs_with_events() (gaitmod.DataProcessor method) create_events_array() (gaitmod.DataProcessor static method) create_trials() (gaitmod.DataProcessor static method) crop_lfp_to_event_times() (gaitmod.DataProcessor static method) CustomGridSearchCV (class in gaitmod) CustomTrainingLogger (class in gaitmod)

D

data_generator() (gaitmod.RegressionLSTMModel method) DataProcessor (class in gaitmod)

define_normal_walking_events() (gaitmod.DataProcessor method) determine_adaptive_filter_params() (gaitmod.DataProcessor static method)

E

evaluate() (gaitmod.BaseModel method) extract_band_power() (gaitmod.FeatureExtractor static method) extract_band_psd() (gaitmod.FeatureExtractor static method) extract_epoched_stat_features() (gaitmod.FeatureExtractor static method)

extract_features() (gaitmod.FeatureExtractor2 method) extract_features_with_labels() (gaitmod.FeatureExtractor2 method) extract_psd_and_band_power() (gaitmod.FeatureExtractor static method) extract_windowed_stat_features() (gaitmod.FeatureExtractor static method)

F

FeatureExtractor (class in gaitmod) FeatureExtractor2 (class in gaitmod) fit() (gaitmod.ClassificationLSTMModel method) (gaitmod.CustomGridSearchCV method) (gaitmod.LinearRegressionModel method) (gaitmod.LSTMClassifier method) (gaitmod.RegressionLSTMModel method)

flatten_features() (gaitmod.FeatureExtractor static method)

G

gaitmod module gaitmod.BaseModel module gaitmod.ClassificationLSTMModel module gaitmod.ClassificationModels module gaitmod.CustomGridSearchCV module gaitmod.CustomTrainingLogger module gaitmod.DataProcessor module gaitmod.FeatureExtractor2 module

gaitmod.LinearRegressionModel module gaitmod.LSTMClassifier module gaitmod.MatFileReader(directory) module gaitmod.RegressionLSTMModel module gaitmod.RegressionModels module gaitmod.Visualise module generate_ch_locs() (gaitmod.DataProcessor static method) get_coefficients() (gaitmod.LinearRegressionModel method) get_intercept() (gaitmod.LinearRegressionModel method) get_trial_event_indices() (gaitmod.DataProcessor static method)

I

initialize_metrics() (gaitmod.BaseModel method)

L

LinearRegressionModel (class in gaitmod) load() (gaitmod.BaseModel static method)

lr_schedule() (gaitmod.LSTMClassifier static method) LSTMClassifier (class in gaitmod)

M

masked_accuracy_score() (gaitmod.LSTMClassifier static method) masked_classification_report() (gaitmod.LSTMClassifier static method) masked_confusion_matrix() (gaitmod.LSTMClassifier static method) masked_f1_score() (gaitmod.LSTMClassifier static method) masked_loss_binary_crossentropy() (gaitmod.LSTMClassifier method) masked_precision_score() (gaitmod.LSTMClassifier static method) masked_recall_score() (gaitmod.LSTMClassifier static method) masked_roc_auc_score() (gaitmod.LSTMClassifier static method) MatFileReader (class in gaitmod) model (in module gaitmod.CustomTrainingLogger) module gaitmod gaitmod.BaseModel gaitmod.ClassificationLSTMModel gaitmod.ClassificationModels gaitmod.CustomGridSearchCV gaitmod.CustomTrainingLogger gaitmod.DataProcessor gaitmod.FeatureExtractor2 gaitmod.LinearRegressionModel gaitmod.LSTMClassifier gaitmod.MatFileReader(directory) gaitmod.RegressionLSTMModel gaitmod.RegressionModels gaitmod.Visualise

N

np_to_dict() (gaitmod.DataProcessor method)

O

on_batch_end() (gaitmod.CustomTrainingLogger method)

on_epoch_begin() (gaitmod.CustomTrainingLogger method) on_epoch_end() (gaitmod.CustomTrainingLogger method)

P

pad_data() (gaitmod.DataProcessor static method) pad_or_truncate() (gaitmod.DataProcessor static method) params (in module gaitmod.CustomTrainingLogger) plot_all_patients_trials() (gaitmod.Visualise static method) plot_all_trial_lengths() (gaitmod.Visualise static method) plot_epoch_psd_comparison() (gaitmod.Visualise static method) plot_epoch_spectrogram_and_psd() (gaitmod.Visualise static method) plot_epochs_with_events() (gaitmod.Visualise static method) plot_event_class_histogram() (gaitmod.Visualise static method) plot_event_occurrence() (gaitmod.Visualise static method) plot_individual_trial_counts() (gaitmod.Visualise static method) plot_label_distribution_boxplot_all_patients() (gaitmod.Visualise static method) plot_raw_data_with_annotations() (gaitmod.Visualise static method) plot_session_counts() (gaitmod.Visualise static method)

plot_single_patient_trial_psd() (gaitmod.Visualise static method) plot_single_patient_trial_spectrogram() (gaitmod.Visualise static method) plot_total_label_counts() (gaitmod.Visualise static method) plot_trial_counts() (gaitmod.Visualise static method) plot_trial_lengths_per_subject_boxplot() (gaitmod.Visualise static method) plot_trial_lengths_per_subject_distr() (gaitmod.Visualise static method) predict() (gaitmod.ClassificationLSTMModel method) (gaitmod.LinearRegressionModel method) (gaitmod.LSTMClassifier method) (gaitmod.RegressionLSTMModel method) predict_proba() (gaitmod.LSTMClassifier method) process_events_kin() (gaitmod.DataProcessor static method) process_events_steps() (gaitmod.DataProcessor static method) process_lfp_data() (gaitmod.DataProcessor static method) process_trials_and_events() (gaitmod.DataProcessor static method)

R

read_data() (gaitmod.MatFileReader method) RegressionLSTMModel (class in gaitmod) RegressionModels (class in gaitmod) remove_nan_events() (gaitmod.DataProcessor static method) remove_trials_with_short_labels() (gaitmod.DataProcessor static method) rename_keys() (gaitmod.DataProcessor static method) rename_lfp_channels() (gaitmod.DataProcessor static method)

reset_state() (gaitmod.BaseModel.MyMeanAbsoluteError method) (gaitmod.BaseModel.MyMeanSquaredError method) (gaitmod.BaseModel.R2Score method) reshape_lfp_data() (gaitmod.FeatureExtractor static method) result() (gaitmod.BaseModel.MyMeanAbsoluteError method) (gaitmod.BaseModel.MyMeanSquaredError method) (gaitmod.BaseModel.R2Score method)

S

safe_format() (gaitmod.CustomTrainingLogger method) save() (gaitmod.BaseModel method) segment_and_label_trials() (gaitmod.DataProcessor static method)

select_feature() (gaitmod.FeatureExtractor2 method) sort_and_filter_events() (gaitmod.DataProcessor static method) summary() (gaitmod.LSTMClassifier method)

T

train() (gaitmod.BaseModel method)

trim_data() (gaitmod.DataProcessor method) truncate_data() (gaitmod.DataProcessor static method)

U

update_state() (gaitmod.BaseModel.MyMeanAbsoluteError method) (gaitmod.BaseModel.MyMeanSquaredError method) (gaitmod.BaseModel.R2Score method)

V

Visualise (class in gaitmod)